Mary Kom said she merely left it on the federation and did not pressurise it to rule in her favour.
Thapa will now take on the winner of the bout between Haidara Alasaly and Minsu Choi in the quarter-finals.
Anamika, the reigning national champion, lost by a 1-4 split verdict against China's Hu Meiyi in the lightweight final.
The BFI wanted to start the camp on June 10 originally but had been waiting to secure permissions from the state government and the Sports Authority of India (SAI).
In the ongoing Women's World Boxing Championship, Preeti, Nitu Ghanghas and Manju Bamboriya clinched thumping wins on Saturday.
India would be aiming to better their best-ever show when the trio of Deepak Bhoria, Mohammad Hussamudin and Nishant Dev step inside the ring in pursuit of summit berths in the men's boxing World Championships.
In the ongoing Women's World Championship, Jaismine Lamboria clinched her opening bout on Friday.
Shiva Thapa will next face Nader Odah of Kuwait in the quarter-finals on Tuesday.
Nikhat registered a dominating 5-0 victory, thrashing Thailand's Jitpong Jutamas without breaking a sweat in the 52kg final with judges scoring the bout 30-27, 29-28, 29-28, 30-27, 29-28 in the Indian's favour.
For the Dronacharya awards, the BFI has finalised the names of national women's coach Mohammed Ali Qamar and assistant coach Chhote Lal Yadav.
Indian boxers assured two medals in the ongoing World Championships.
Tokyo Olympian and 2019 Asian Championships silver medallist Ashish Chaudhary will also be representing the country for the second time and would be keen to add another major medal to his name.
Mary Kom (51kg) claimed her eighth world medal at the recently-concluded championships in Russia and BFI now plans to send the Manipuri boxer for the Olympic qualifiers in China
World champion Nikhat Zareen is keen to use the experience gained in the recently-concluded global event to qualify for the 2024 Olympics.
India's schedule on Day 4 of the Asian Games on Wednesday, September 27.
'Will tell BFI to decide what's best for nation'
Mary Kom (51kg) claimed her eighth world medal at the recently-concluded championships in Russia. She was selected for the event ahead of Zareen, who was refused a trial by the Boxing Federation of India (BFI), which decided to go by Mary Kom's consistent performances while making the choice.
'The experience and dedication of our boxers make me confident in their abilities to excel at the Asian Games.'
India lost the hosting rights of the 2021 men's World Boxing Championship to Serbia after the national federation failed to pay the host fee, prompting the International Boxing Association (AIBA) to terminate the agreement signed in 2017. The elite competition, which would have happened for the first time in the country, will now be held in the Serbian city of Belgrade.
Mary Kom wants Asian Games to be her swansong
For most part, Indian boxing had lots to celebrate and it started with the season-opening Strandja Memorial, one of Europe's oldest and most competitive tournaments.
India's women boxers Nitu (48kg) and Manisha (57kg) advanced to the quarter-finals of the IBA World Championships in Istanbul, after registering contrasting victories on Saturday.
The 24-year from Assam, going by her strategy of using her long hands to reach the opponent from afar, was unable to penetrate Ngamba defence.
Indian boxer Anamika (50kg) showed her prowess and technical superiority to advance to the pre-quarterfinals of the IBA Women's World Boxing Championships
Asian Games gold-winning boxer Dingko Singh was on Saturday airlifted from Imphal to New Delhi for his cancer treatment. Dingko's transfer to Delhi by a SpiceJet air ambulance was facilitated by the Boxing Federation of India (BFI) after he missed a scheduled radiation therapy session due to the ongoing coronavirus-forced national lockdown.
Team India will compete in 15 sporting disciplines as well as four disciplines in the para sports category.
In its 19-page Standard Operating Procedure for resumption of training as well as competitions, the Boxing Federation of India has mandated health protocols similar to what the Sports Authority of India has suggested.
Zareen was no match for her young opponent as she dominated the bout from start to finish
All of the boxers have been training at their respective homes ever since the nationals camps came to a halt in mid-March owing to the virus outbreak
India's boxers Govind Sahani (48kg), Ananta Pralhad Chopde (54kg) and Sumit (75kg) struck gold at the Thailand Open in Phuket, notching up comprehensive wins in their respective bouts on Saturday.
Nikhat, who defeated world champions Paltceva Ekaterina of Russia and Nazym Kyzaibay of Kazakhstan in her last two bouts, suffered a 0-5 loss
The Indian boxing team, which landed in Birmingham on Monday, wasted no time as they immediately started their practice for the mega-event.
Summary of sports events and persons who made news on Friday
The two boxers, who had signed up with the Indian Boxing Council (IBC), will be re-joining the national camp after submitting letters of apology to the Boxing Federation of India (BFI) for abruptly leaving the amateur circuit.
Abhinav Bindra backed Nikhat Zareen's demand for a trial bout against the six-time World champion before India's squad for next year's Olympic Qualifiers is decided.
Vijender, who is promoted by IOS Boxing Promotions, is the reigning WBO Asia Pacific super middleweight champion and is expected to defend his title for a second time next month after the IPL.
Six-time World champion M C Mary Kom and Nikhat Zareen will clash in the 51kg category final of the women's boxing trials for next year's 2020 Tokyo Olympic Qualifiers after claiming unanimous victories in their respective first-round bouts, in New Delhi, on Friday. Former junior World champion Zareen defeated reigning national champion Jyoti Gulia, while multiple-time Asian champion Mary Kom got the better of Ritu Grewal.
He had already scripted history but the Indian boxing ace said he wasn't quite done as he aimed for the gold in the World Championship
Panghal is the only Indian Olympic-bound boxer to be ranked as number
Borgohain (69kg) signed off with a bronze medal in the Olympic Games after a comprehensive 0-5 loss to reigning world champion Busenaz Surmeneli.