The Portuguese forward then fired in the penalty in the sixth minute of stoppage time.
Having beaten Colombia in a tense Round of 18 match at the World Cup England can now look forward to a quarter-final against Sweden with the curse of the shootout lifted.
Juventus staged a superb revival to battle back from two goals down and rescue their Champions League hopes with a 2-2 draw against Bayern Munich in their last 16 first leg on Tuesday.
Sevilla will attempt to draw Bayern Munich out of their comfort zone and take the game to the Germans,
Valverde said he was concerned about the team's away form after they were comprehensively beaten 2-0 by promoted Granada
Juventus appear to be suffering from a predictable early-season slump in the wake of a summer spent fumbling around the transfer market in a bid to rebuild a team that had grown to dominate Serie A.
News of all that's transpired on and off the football field
Images from Tuesday night's UEFA Champions League group stage matches.
Juve forward Cristiano Ronaldo had an unusually quiet game after scoring a hat-trick against Atletico in last year's competition, although he came within inches of grabbing a last-gasp winner when he sent a shot just past the far post.
Genoa handed Serie A leaders and titleholders Juventus a dramatic first league defeat of the season when Luca Antonini scored in the fourth minute of stoppage time to give them a 1-0 win on Wednesday.
News of all that's transpired on and off the football field
Images from Champions League matches played across Europe on Tuesday
News of all that's transpired on and off the football field.
Napoli's decision to loan Emanuele Calaio to Genoa came back to haunt them on Monday when the 32-year-old scored with a late free kick in a 1-1 Serie A draw costing his owners two points in the race for a Champions League spot.
A summary of Wednesday's matches in the UEFA Champions League.
A summary of the results of the football matches played across Europe on Sunday
A round-up of the top-flight football matches played across Italy and Germany on Sunday
A summary of Saturday's action in Ligue 1, La Liga and Serie A.
News of all that's transpired on and off the football field
A round-up of Tuesday night's matches in the UEFA Champions League.
Manchester City went top of the Premier League after securing a controversial 2-0 win at Newcastle United on Sunday with an early Edin Dzeko goal and a stoppage time effort from Alvaro Negredo.
Substitute Costa slipped the ball past the keeper from close range in the 48th minute of the second half to break the deadlock and extend Brazil's winning run to 11 matches.
News of all that's transpired on and off the football field
Bayern Munich and Barcelona registered easy wins, while Manchester United came from behind to beat CSKA Moscow 2-1 and Chelsea surrendered the top spot after a 1-1 at home against Atletico Madrid.
Images from the Champions League matches played on Wednesday
Juventus goalkeeper Gianluigi Buffon saved a penalty and Andrea Pirlo curled in a trademark free kick late in the game to give the Serie A leaders a dramatic 1-0 win at Genoa on Sunday.
Argentina remain winless in South American qualifying for the 2018 World Cup after struggling to a 0-0 in Paraguay on Tuesday, while Uruguay and Ecuador both made it two wins from two games to top the group.
IMAGES from the Champions League matches played on Tuesday
Real Madrid edged past Sporting Lisbon 2-1, while Juventus came from behind to secure a 3-1 win at Sevilla and Borussia Dortmund crushed Legia Warsaw 8-4 to set a record for the most goals scored in a Champions League match.
Barcelona must to wait to confirm a place in the Champions League last 16 after dropping points for the first time in Group D in an absorbing 0-0 draw at Olympiakos Piraeus on Tuesday.
A summary of Wednesday's matches in the UEFA Champions League.
Ronaldo equals Raul Real Madrid record while Morata emulates Del Piero after scoring in five consecutive matches
Dutch teenager Max Verstappen is a rare talent comparable to the late Ayrton Senna, according to Red Bull's Formula One consultant Helmut Marko.