The MoU was inked on February 3 for a period of three years.
Pandit, who was appointed as the JNU VC in February last year, said some people opposed her decision to put the national flag and Prime Minister Narendra Modi's photo on the varsity premises.
The varsity will send a proposal in this regard to the University Grants Commission and the ministry of education.
Talking about April 10 violence, she said that there are 17 hostels in the university and in 16 of those, everything went on peacefully with the iftar and the Ram Navami puja being organised together.