Mutt manager Sundaresa Iyer and Kaladi Vishwanatha Iyer had sought and been granted anticipatory bail in this case.
After completing the pre-charge formalities, Judicial First Class Magistrate G Uthamraj sent the case file to principal district judge, Chengalpattu, who will assign the case to a sessions judge.
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The Supreme Court today asked the trial court at Kancheepuram, Tamil Nadu, not to frame charges against the Kanchi\nsankaracharya and the junior pontiff in the Sankararaman murder case till October 4
In his application, Vijayendra said he apprehended arrest following the alleged confessional statements made by Appu and Ravi Subramaniam, both accused in the case.
The Supreme Court Friday issued notice to the state of Tamil Nadu on a petition filed by K G Kumaraswamy alias Appu, prime accused in the Sankararaman murder case.
Appu, alias Krishnasamy, was interrogated in a hotel in Mamallpuram in Kanchipuram district throughout Sunday night.
The HC rejected the seers' bail application on Wednesday.
Seven months after it challenged the bail granted to Kanchi Sankaracharya Jayendra Saraswathi in the Radhakrishnan assault case, the Tamil Nadu government on Monday withdrew its appeal in the Supreme Court.
K Premkumar, heading the investigation into the Sankararaman murder case in which Kanchi seer Jayendra Saraswathi has been arrested, has been brough back as the SP, Kanchipuram.
The amount has been sanctioned from the chief minister's relief fund.
'It is not possible that the Shankaracharya was arrested in Mehboobnagar without the chief minister of the state consulting the Centre on the issue,' M M Joshi said.
An application in this regard will be moved before Kanchipuram First Class Judicial Magistrate G Uttamarjan when the senior pontiff is produced before the court, mutt officials said.
Submitting the application before Magistrate G Uttamaraj, the counsel said he had earlier filed an application seeking certain facilities like hospitalisation and permission to conduct pujas when the seer was arrested.
Shops were open and bus and train services were unaffected.
Television's swish set walk the red carpet.
Kanchi Sankaracharya Jayendra Saraswathi will present a 11.5-kg gold crown to the hill shrine of Lord Venkateswara on Thursday.
Sankararaman's widow has opposed the petition seeking transfer of the case outside Tamil Nadu.
'When name and fame come, people do change, but Srinivas was one person who never changed. He was a personification of humility and moved with all fellow musicians and everyone in society with respect.'
Deputy Chief Minister N China Rajappa and a host of other ministers also took a holy dip on the occasion.
Earlier in the day, the magistrate had extended the judicial remand of Ravi Subramaniam, who had turned approver in the case, till February 3.
The police on Friday filed a charge sheet in the sensational murder case that led to the arrest of both the pontiff and his deputy.
"We told the prime minister that it is the question of sentiments of crores of Hindus, hurt by investigations being conducted with a vindictive attitude and the ill-treatment meted out to Jayendra Saraswati," BJP president L K Advani said.
The move is widely seen as a fall out of the Supreme Court granting bail to Kanchi Sankaracharya Jayendra Saraswati in the Sankararaman murder case.
The Supreme Court will give its verdict on the bail application of Kanchi Shankaracharya Jayendra Saraswati in the Sankararaman murder case on Monday.
M N Krishanmani, the Kanchi Shankaracharya's lawyer, believes Jayendra Saraswati is the victim of personal vendetta.
The seer, in his petition, said the Madras high court had erred by not considering the basis of facts narrated by the prosecution.
The prosecution had told the Madras high court on Monday that the pontiff had extensive telephonic conversations with Usha at Srirangam.
The way things have gone and the way the Shankaracharya has been treated, the people and the nation are concerned."
The public prosecutor sought the extension of the seer's police custody saying the police needed to verify some bank accounts.
An advocate and the president of a political outfit have filed the petitions opposing grant of bail to the seer.