Chairs were thrown at Amit Shah and he was attacked with sharp-edged weapons at the meeting, police said.
An injured Shah was taken to the V S Hospital where his condition was stated to be out of danger.
Pandya, a known critic of caretaker Chief Minister Narendra Modi, was seeking renomination from the Ellisbridge assembly constituency, but was denied a ticket.
Three persons, believed to be Pandya's supporters, have been named in the FIR filed by the victims, police said. No arrests have been made so far, they added.
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